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stanstrup / PredRet

Shiny app for retention time prediction
GNU General Public License v2.0
9 stars 6 forks source link

No mongoDB connection! #69

Closed dicarez closed 6 years ago

dicarez commented 6 years ago

Error reported while using the server. Unable to process any data file.

stanstrup commented 6 years ago

Thanks for reporting. Should be fixed now.

Dorrain commented 6 years ago

Hi Jan. I am experiencing some problems while trying to “process and add data” after uploading the csv file. An error message pops up saying: the application expectedly exited. Could you please look into this? Thanks.

stanstrup commented 6 years ago

Could you send me a sample file? Then I look into next week. The system is not very robust so could you check that it is comma separated and not something else?

dicarez commented 6 years ago

I also experience the same issue in my latest attempt of using the server. I have a large list of retention time to estimate from a LC-MS result, so I imagined the extension of the data could be a problem. I send you the sample file. Thank you very much.

2017-10-14 3:46 GMT-03:00 Jan Stanstrup notifications@github.com:

Could you send me a sample file? Then I look into next week. The system is not very robust so could you check that it is comma separated and not something else?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/stanstrup/PredRet/issues/69#issuecomment-336614946, or mute the thread https://github.com/notifications/unsubscribe-auth/AIN4CKjBinGezsenCI4Gquyd6JTt1y_Nks5ssFipgaJpZM4P2HMe .

stanstrup commented 6 years ago

Hi. Could you send the sample to stanstrup@gmail.com? I see that I had an old email address listed.

dicarez commented 6 years ago

Of course, here it is. Thanks.

2017-10-17 4:18 GMT-03:00 Jan Stanstrup notifications@github.com:

Hi. Could you send the sample to stanstrup@gmail.com? I see that I had an old email address listed.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/stanstrup/PredRet/issues/69#issuecomment-337140551, or mute the thread https://github.com/notifications/unsubscribe-auth/AIN4CJw9G9oalRPT8cA2h-_ViKQnRECoks5stFTGgaJpZM4P2HMe .

stanstrup commented 6 years ago

I don't see anything wrong with the formatting of the file. But the method column should match the name of a system you have created in the "add or modify system" tab.

If that doesn't solve it could you try a subset of the data to see if it indeed chokes at something?

Btw.: How come the retention times are discrete like that? Also I assume these are not experimental retention times?