search

stanstrup / PredRet

Shiny app for retention time prediction
GNU General Public License v2.0
9 stars 6 forks source link

Run Time Estimate #83

Closed angepoch closed 2 years ago

angepoch commented 2 years ago

Hello!

First, thank you for creating this tool, it will really help with the untargeted metabolomics annotation process.

I was wondering what is the approximate time it takes to get predictions for our data. The website says approx. 30 minutes, but I have run it for over 24 hours and it is still not showing on my end.

Thanks in advance for your help!

stanstrup commented 2 years ago

Which is your dataset? Perhaps it wasn't able to make any models.

On Wed, Dec 1, 2021 at 10:14 PM angepoch @.***> wrote:

Hello!

First, thank you for creating this tool, it will really help with the untargeted metabolomics annotation process.

I was wondering what is the approximate time it takes to get predictions for our data. The website says approx. 30 minutes, but I have run it for over 24 hours and it is still not showing on my end.

Thanks in advance for your help!

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/stanstrup/PredRet/issues/83, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABCSTSX7LXZVU3WGVW6SRG3UO2F5DANCNFSM5JFPZHLQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

angepoch commented 2 years ago

Hello,

It ended up showing after ~48 hours. There must have been a lot of data queued ahead of me.

Thanks!

stanstrup commented 2 years ago

Right. It is possible to takes much longer now than before. Since it is making models one system against one system the number of calculations grows by ~N^2 for the number of systems in the database. It has grown significantly since it was developed.