Closed goodcqzz closed 5 months ago
郑博士你好！ 在panpop文件夹里直接运行的Snakefile_NGS文件，测试下，但报错了。 使用的是NGS模式，报错如下： snakemake -j 3 --reason --printshellcmds -s Snakefile_NGS ……………… Error in rule cal_avg_depth_aug2: jobid: 27 input: 2.callSV/s2/s2-Ref.gaffe.aug.q5.pack, 2.callSV/s2/s2-Ref.gaffe.aug.pg output: 2.callSV/s2/s2-Ref.gaffe.aug.q5.pack.DPinfo log: 2.callSV/logs/s2-Ref-gaffe-aug.q5.pack.DPinfo.log.txt (check log file(s) for error details) shell: perl /home/gaoch/biosoft/panpop/scripts/cal_dp_from_pack.pl 2.callSV/s2/s2-Ref.gaffe.aug.q5.pack 2.callSV/s2/s2-Ref.gaffe.aug.pg 2.callSV/s2/s2-Ref.gaffe.aug.q5.pack.DPinfo 2.callSV/logs/s2-Ref-gaffe-aug.q5.pack.DPinfo.log.txt s2 2>> 2.callSV/logs/s2-Ref-gaffe-aug.q5.pack.DPinfo.log.txt (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!) 感谢感谢！！！
已解决，忘记激活conda虚拟环境了。
goodcqzz
commented
5 months ago goodcqzz
commented
5 months ago
郑博士你好！ 在panpop文件夹里直接运行的Snakefile_NGS文件，测试下，但报错了。 使用的是NGS模式，报错如下： snakemake -j 3 --reason --printshellcmds -s Snakefile_NGS ……………… Error in rule cal_avg_depth_aug2: jobid: 27 input: 2.callSV/s2/s2-Ref.gaffe.aug.q5.pack, 2.callSV/s2/s2-Ref.gaffe.aug.pg output: 2.callSV/s2/s2-Ref.gaffe.aug.q5.pack.DPinfo log: 2.callSV/logs/s2-Ref-gaffe-aug.q5.pack.DPinfo.log.txt (check log file(s) for error details) shell: perl /home/gaoch/biosoft/panpop/scripts/cal_dp_from_pack.pl 2.callSV/s2/s2-Ref.gaffe.aug.q5.pack 2.callSV/s2/s2-Ref.gaffe.aug.pg 2.callSV/s2/s2-Ref.gaffe.aug.q5.pack.DPinfo 2.callSV/logs/s2-Ref-gaffe-aug.q5.pack.DPinfo.log.txt s2 2>> 2.callSV/logs/s2-Ref-gaffe-aug.q5.pack.DPinfo.log.txt (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!) 感谢感谢！！！