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starskyzheng / panpop

Application of pan-genome for population
MIT License
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Error in using realign_gen_mask.pl #64

Closed ChuanzhengWei closed 5 months ago

ChuanzhengWei commented 5 months ago

郑老师，您好，我又遇到一个问题，在realign_gen_mask.pl处，发生了一个错误， perl /public/home/weichuanzheng/project/08.pangenome/05.SVcalling/10.panpop/panpop/scripts/realign_gen_mask.pl -i 04_consensus_vcf/s186/02.merge_vcf_same_pos.sorted.vcf.gz -o 04_consensus_vcf/s186/02.merge_vcf_same_pos.sorted.vcf.gz.mask.bed --tmpdir Default >>logs/3.02.s186.gen_merge_mask.log 2>&1 这是我的完整日志： 2024-06-18T090900.211480.snakemake.log

Error： Error in tempfile() using template /run/user/32746/XXXXXXXXXX: Parent directory (/run/user/32746/) does not exist at /public/home/weichuanzheng/project/08.pangenome/05.SVcalling/10.panpop/panpop/scripts/../lib/realign_alts.pm line 169. 这是错误处的日志： 3.02.s186.gen_merge_mask.log

ChuanzhengWei commented 5 months ago

我在base.yaml中修改了memory_tmp_dir的参数后，貌似恢复了正常。