Closed spsc83 closed 4 years ago
When I tried the example of the converting step, I got this: [myname@loginnode1 EvalSVcallers]$ scripts/convert_SV_callers_vcf.pl -t Pindel pindel.DEL.out pindel.DUP.out > Pindel.vcf TOOL name specified is absent in 69 tools we analyzed or does not match the names:
I checked the Perl code. And I guess line 47 of scripts/convert_SV_callers_vcf.pl should be like this: my @convert_script = <$script_path/vcfconvert/convert$tool*.pl>;
Sorry for delay of my response. The script, convert_SV_callers_vcf.pl, was fixed to correctly assign the vcf_convert subdirectory.
When I tried the example of the converting step, I got this: [myname@loginnode1 EvalSVcallers]$ scripts/convert_SV_callers_vcf.pl -t Pindel pindel.DEL.out pindel.DUP.out > Pindel.vcf TOOL name specified is absent in 69 tools we analyzed or does not match the names:
I checked the Perl code. And I guess line 47 of scripts/convert_SV_callers_vcf.pl should be like this: my @convert_script = <$script_path/vcfconvert/convert$tool*.pl>;