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stat-lab / EvalSVcallers

Evaluate the performances (precision and recall) of structural variation (SV) callers
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Wrong directory! #5

Closed spsc83 closed 4 years ago

spsc83 commented 4 years ago

When I tried the example of the converting step, I got this: [myname@loginnode1 EvalSVcallers]$ scripts/convert_SV_callers_vcf.pl -t Pindel pindel.DEL.out pindel.DUP.out > Pindel.vcf TOOL name specified is absent in 69 tools we analyzed or does not match the names:

I checked the Perl code. And I guess line 47 of scripts/convert_SV_callers_vcf.pl should be like this: my @convert_script = <$script_path/vcfconvert/convert$tool*.pl>;

stat-lab commented 4 years ago

When I tried the example of the converting step, I got this: [myname@loginnode1 EvalSVcallers]$ scripts/convert_SV_callers_vcf.pl -t Pindel pindel.DEL.out pindel.DUP.out > Pindel.vcf TOOL name specified is absent in 69 tools we analyzed or does not match the names:

I checked the Perl code. And I guess line 47 of scripts/convert_SV_callers_vcf.pl should be like this: my @convert_script = <$script_path/vcfconvert/convert$tool*.pl>;

Sorry for delay of my response. The script, convert_SV_callers_vcf.pl, was fixed to correctly assign the vcf_convert subdirectory.