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stat-lab / MOPline

Detection and genotyping of structural variants
MIT License
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One sample analysis #5

Closed akiss-me closed 1 year ago

akiss-me commented 1 year ago

Hi, thank you for this tool! Is it possible to use this pipeline to analyze just one sample, without joint genotyping? What steps should be included in such analysis?

stat-lab commented 1 year ago

You can perform all the steps of MOPline using a single sample. If SV genotyping is not needed, the steps-3 and -4 (joint call and SMC/genotyping steps) can be omitted. Thank you for your interest in our study.

akiss-me commented 1 year ago

You can perform all the steps of MOPline using a single sample. If SV genotyping is not needed, the steps-3 and -4 (joint call and SMC/genotyping steps) can be omitted. Thank you for your interest in our study.

Thank you for your recommendation. Having a ready-made singularity image with most of the tools helped me a lot. Thanks again for publishing the MOPline.