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statOmics / msqrob2

Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure
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warnings in hurdle method #15

Closed ococrook closed 4 years ago

ococrook commented 4 years ago

The following warning given. If the warning is intended then we need to explain it, else we should try and remove it else people will be confused.

pe <- msqrobQB(object = pe, i = "proteinCount", formula = ~condition)

Warning in eval(family$initialize): non-integer counts in a binomial glm!

ococrook commented 4 years ago

Solution:

add short explination of off-set (and that this will generate a warning)

add warning = FALSE to rmd

statOmics commented 4 years ago

Would you include it both in the Rmd script and in the documentation of the fit function?