search

statOmics / msqrob2

Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure
9 stars 10 forks source link

Implemented msqrobAggregate() method for SummarizedExperiment objects #60

Closed cvanderaa closed 5 months ago

cvanderaa commented 5 months ago

Here is a PR to add a msqrobAggregate() method for SummarizedExperiment objects.

Would this be ok for you @StijnVandenbulcke? If yes, I checked the package locally, but I suggest to wait for GHA checks before merging.

I also changed the GitHub Actions to stop testing on the release branch of Bioconductor, and fetched the version bumps from Bioconductor.

StijnVandenbulcke commented 5 months ago

Thanks, locally it works for me as well.

Github Actions are failing due to not having the reshape2 package which is needed for the newest MultiAssayExperiment update update.

cvanderaa commented 5 months ago

Ok great!