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statOmics / satuRn

satuRn is a highly performant and scalable method for performing differential transcript usage analyses.
https://statomics.github.io/satuRn/
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Empty levels #18

Closed jgilis closed 2 years ago

jgilis commented 2 years ago

The goal of this PR is twofold:

  1. Allow the fitDTU and testDTU function to internally handle design formulas with empty/removed factor levels, resolving satuRn issue 16 (https://github.com/statOmics/satuRn/issues/16)
  2. Update GitHub Actions workflow to run checks for: Windows + bioc 3.14, MacOS + bioc 3.14, Linux + bioc 3.14 and Linux + bioc devel (3.15)
jgilis commented 2 years ago

The goal of this PR is twofold:

  1. Allow the fitDTU and testDTU function to internally handle design formulas with empty/removed factor levels, resolving satuRn issue 16 (Issue related to fitDTU .calcVcovUnscaled() #16)
  2. Update GitHub Actions workflow to run checks for: Windows + bioc 3.14, MacOS + bioc 3.14, Linux + bioc 3.14 and Linux + bioc devel (3.15)