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statbiophys / HLAGuessr

GNU General Public License v3.0
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Traceback error when attempting to run #1

Open ryanreis333 opened 6 months ago

ryanreis333 commented 6 months ago

Hi, thank you for developing this and making it available. I have some VDJ seq data I'm hoping to use this on, but I can't seem to figure out where I'm going wrong with it. It seems like I'm able to get it installed correctly in a conda env, but when I go to run it, I get the following error message:

Traceback (most recent call last): File "/home/user/.conda/envs/hlaguessr/bin/HLAGuessr-infer_hla", line 8, in sys.exit(main()) File "/home/user/.conda/envs/hlaguessr/lib/python3.6/site-packages/HLAGuessr/infer_hla.py", line 85, in main if options.infile_name is None: AttributeError: 'Values' object has no attribute 'infile_name'

This is what I am currently running, replacing user with my username: ~$ HLAGuessr-infer_hla -a ~user/alpha_data.tsv -b ~user/beta_data.tsv

It seems like it is attempting to run and finding the files fine, so any help on what I'm seeing now would be much appreciated! Thank you

Marcus-Mendes commented 6 months ago

I am having the same error. But I am not using conda. I tried my own dataset and the example dataset and none of them work.

ryanreis333 commented 6 months ago

I am having the same error. But I am not using conda. I tried my own dataset and the example dataset and none of them work.

Thanks for adding in a word, Marcus. Glad to hear I'm not the only one with this issue -- I'm thinking it's maybe something related to a change in one of the underlying python packages HLAGuessr relies on?