issues
search
statdivlab
/
corncob
Count Regression for Correlated Observations with the Beta-binomial
102
stars
22
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
contrastsTest issue
#130
msmcfarlin
closed
2 years ago
1
differentialTest failing on relatively simple model
#129
mirpie
opened
2 years ago
3
`differentialTest` fails with `boot = TRUE`
#128
amorris28
closed
10 months ago
9
Appropriate use of corncob?
#127
msmcfarlin
closed
2 years ago
2
Pairwise contrasts
#126
gcuster1991
opened
2 years ago
1
Add verbosity for differentialTest and suggest `slam`
#125
nickp60
closed
2 years ago
4
error in demo data
#124
Ivy-ops
closed
3 years ago
3
Runs fine w/ Boot = FALSE, error when BOOT = TRUE
#123
eveistswp
closed
10 months ago
4
Change the baseline
#122
eveistswp
closed
2 years ago
6
model optimization error bbdml and differentialTest
#121
amy-briggs
closed
3 years ago
2
Interpreting beta coefficients for binary co-variates
#120
mnadim01
closed
3 years ago
1
Different results under different OS
#119
ashishdamania
closed
3 years ago
4
Don't have a problem, just a comment
#118
VManning
closed
3 years ago
1
editing bbdml plots
#117
mtswanson2017
closed
3 years ago
1
Cannot install the package
#116
NicolasLouw
closed
3 years ago
5
biased estimation of model parameters?
#115
cdiener
closed
3 years ago
3
parallel processing
#114
Midnighter
opened
3 years ago
5
extract model data
#113
Midnighter
opened
3 years ago
5
Error with nesting of abundance models
#112
mirpie
closed
3 years ago
5
Random effects for individuals ?
#111
Harithaa-Anandakumar
closed
3 years ago
4
Update install instructions and badges to include CRAN
#110
bryandmartin
closed
3 years ago
0
Ubuntu release can't load phyloseq
#109
bryandmartin
closed
3 years ago
0
Migrate from travis to GitHub Actions, speed up examples
#108
bryandmartin
closed
3 years ago
0
Many ASVs with a high absolute mu but insignificant
#107
roey-angel
closed
3 years ago
9
edit/fix examples for CRAN
#106
bryandmartin
closed
3 years ago
0
Capitalize DOI and add pipe for CRAN
#105
bryandmartin
closed
3 years ago
0
Documentation revisions for CRAN
#104
bryandmartin
closed
3 years ago
0
Minor tweaks for CRAN compatability
#103
bryandmartin
closed
3 years ago
0
Fix try_only bug
#102
bryandmartin
closed
3 years ago
0
Pull in various minor changes
#101
bryandmartin
closed
3 years ago
0
Differential tests do not recognise groups with zero reads
#100
Trenthaydon
closed
3 years ago
2
corncob in CRAN or bioconductor
#99
Russel88
closed
3 years ago
3
waldchisq_test - silently fails when limma is missing
#98
AdrianS85
closed
3 years ago
2
continuous covariate
#97
Ivy-ops
closed
3 years ago
1
possibly misguided question on controlling for certain factors with null formula
#96
AstrobioMike
closed
3 years ago
5
Outliers & best practices
#95
ianartmor
closed
3 years ago
1
Feature request sent via email: prediction intervals
#94
bryandmartin
opened
3 years ago
1
Feature request sent via email: extracting estimates
#93
bryandmartin
opened
3 years ago
2
Error in `differentialTest` when phyloseq is not imported
#92
mikemc
closed
3 years ago
1
Consider updating package versions when changes are made
#91
mikemc
closed
3 years ago
1
Fix factor ordering for plots with numeric. Fixes #80
#90
bryandmartin
closed
3 years ago
1
Fixing some old issues
#89
bryandmartin
closed
3 years ago
1
Modify try_only and add full_output
#88
bryandmartin
closed
3 years ago
1
differentialTest seems broken
#87
cdiener
closed
3 years ago
7
ERROR: compilation failed for package ‘lpSolveAPI’
#86
Ivy-ops
closed
3 years ago
3
Feature request: Allow `try_only` to define specific taxa to test in `differentialTest()`
#85
mikemc
closed
3 years ago
8
easy way to get differentialTest() to return full bbdml objects for automatic plotting?
#84
gzahn
closed
3 years ago
3
Use of `offset()` in formulas to specify fixed coefficients
#83
mikemc
opened
4 years ago
3
summary of bbdml does not show coefficients of one of the groups of the categorical variable
#82
golamrabbani268
closed
4 years ago
5
At long last, contrasts!
#81
bryandmartin
closed
4 years ago
1
Previous
Next