I am working on the exome aray data (30% common variants and 70% rare variants). When I run EMMAX for the exome array data, it failed. Here is the error message in the log file. I am wondering if the analysis failed because hte exome array snps do not across the whole genome evenly? Thanks!
--test q.emmax
WARNING - "/home/aa_bmi.single.q.emmax.epacts.cmd", line 15: warning: Skipping data file with no valid points
Warning: empty y range [7.30103:7.30103], adjusting to [7.22802:7.37404]
--test emmaxCMC
"/home/aa.gene.emmaxCMC.epacts.cmd", line 15: warning: Skipping data file with no valid points
Warning: empty y range [5.60206:5.60206], adjusting to [5.54604:5.65808]
I am working on the exome aray data (30% common variants and 70% rare variants). When I run EMMAX for the exome array data, it failed. Here is the error message in the log file. I am wondering if the analysis failed because hte exome array snps do not across the whole genome evenly? Thanks!
--test q.emmax
WARNING - "/home/aa_bmi.single.q.emmax.epacts.cmd", line 15: warning: Skipping data file with no valid points Warning: empty y range [7.30103:7.30103], adjusting to [7.22802:7.37404]
--test emmaxCMC
"/home/aa.gene.emmaxCMC.epacts.cmd", line 15: warning: Skipping data file with no valid points Warning: empty y range [5.60206:5.60206], adjusting to [5.54604:5.65808]