But I can't understand what comparison is being made. It happens when I process the very GWAS file, so it is not comparing alleles with the other GWAS results. It reads as if it is being compared to a reference build but I dont see that in the source code.
Hi, I am getting a lot of warnings with the above text.
I found the source code origin of the warning:
But I can't understand what comparison is being made. It happens when I process the very GWAS file, so it is not comparing alleles with the other GWAS results. It reads as if it is being compared to a reference build but I dont see that in the source code.
Any further info would be appreciated.