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statgen / Minimac4

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Imputation aborted #46

Closed albaicans closed 2 years ago

albaicans commented 2 years ago

Hi, I'm using Minimac4 for imputation with 1000 Genomes reference panel. While I could impute all other chromosomes successfully, I get this error when imputing chromosome 10: "minimac4: /build/minimac4-1KJ7yD/minimac4-1.0.2/src/MarkovModel.cpp:1085: void MarkovModel::unfoldProbabilities(int, std::vector&, std::vector&, std::vector&, int, std::vector&, int): Assertion `adj_norec[i]<1e18' failed. Aborted (core dumped)" The reading of input file and reference panel file is done successfully, as well as chunking. The error happens when starting imputation. Do you know what it means and how can I solve it? Thank you very much,

Alba

jonathonl commented 2 years ago

This is fixed in the master branch. Please download from https://github.com/statgen/Minimac4/archive/refs/heads/master.zip

albaicans commented 2 years ago

Thank you, it works now!

abiddanda54gene commented 2 years ago

@jonathonl could this fix be tagged in a release build of minimac4? Its nice to have a tracked and working version that isn't just the current master branch if possible.

jonathonl commented 2 years ago

@abiddanda54gene, I just created a release: https://github.com/statgen/Minimac4/releases/tag/v1.0.3.