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statgen / bamUtil

http://genome.sph.umich.edu/wiki/BamUtil
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FZ tag of type B not supported #2

Closed nh13 closed 11 years ago

nh13 commented 12 years ago

The SAM spec details the type "B" array tag, which is not supported here. The error is: parsing BAM - Unknown custom field of type FZ:B terminate called after throwing an instance of 'std::runtime_error' what(): FAIL_PARSE: Unknown tag type. Aborted

mktrost commented 12 years ago

This should now be fixed by updating to the current development version of libStatGen. If you did a "git clone" from github on libStatGen, just cd into that directory and do a "git pull" and rebuild both libStatGen and bamUtil using "make".

Let me know if this fixes your problem or if you have any questions.