statgen / bamUtil

http://genome.sph.umich.edu/wiki/BamUtil
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Makefile should not ignore system LDFLAGS #58

Open bichkd opened 4 years ago

bichkd commented 4 years ago

If the compiler toolchain is in a non-standard location, the current Makefile does pick up the correct system includes from CFLAGS, but does not use the corresponding -L from LDFLAGS.

This produces a broken binary (linked against the wrong version of libstdc++).