How to use microarray SNP data as reference genotypes in demuxlet?

statgen / demuxlet

Genetic multiplexing of barcoded single cell RNA-seq

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How to use microarray SNP data as reference genotypes in demuxlet? #104

Open josemovi opened 1 year ago

josemovi commented 1 year ago

I can't find much documentation on how to use microarray SNP data to use demuxlet. Could you please provide some insight on how to start from PLINK files to run Demuxlet? Many thanks