statgen / demuxlet

Genetic multiplexing of barcoded single cell RNA-seq
Apache License 2.0
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Required depth for WGS #106

Open daccachejoe opened 1 year ago

daccachejoe commented 1 year ago

Hi -

Looking to use this package to demulitplex my single cell multiome (RNA + ATAC) data containing multiple patient samples. I was wondering if you could give me advice as to what depth/coverage I will need for the WGS/SNP array in order to have confidence in the output?

Thank you!