Output SNP information for the barcodes

statgen / demuxlet

Genetic multiplexing of barcoded single cell RNA-seq

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Output SNP information for the barcodes #14

Closed papanikos closed 6 years ago

papanikos commented 6 years ago

Hello,

The N.SNP in the best output now shows the number of SNPs that are covered for each barcode/droplet. Is there a way to get the actual positions of these SNPs?

yimmieg commented 6 years ago

hi nikos, we have no plans to support this currently. however, there is a hidden --pileup mode feature that might be what you need.