How can I prepare the VCF file?

statgen / demuxlet

Genetic multiplexing of barcoded single cell RNA-seq

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How can I prepare the VCF file? #46

Open ShuqingL opened 5 years ago

ShuqingL commented 5 years ago

Hi authors!

I now have 8 samples, each of which have single-cell RNA sequencing and bulk RNA sequencing. Can I prepare the VCF file by comparing the data of bulk RNASeq data with the reference genome? (eg: GATK alignment)