Closed arogozhnikov closed 4 years ago
I think Fix #59 would fix the OOM issue
@VincentGardeux thanks for the info, but I already wrote my own demultiplexer for rnaseq, I can close this PR if you're confident that problem with too many genotypes was addressed in your patch.
@arogozhnikov yes the patch corrects the issue.
I did not change much the code, so I don't see any potential conflicts/bugs, but would be cool if would be tested on a test dataset at least by another user before merging (we tested it on several datasets and did not see any difference of output (to the byte).
Cheers
Proposing PR because running demuxlet against large number of genotypes drives to OOM