Thank you for your software, it has been very helpful.
I've been having an issue related to a core dumped while using the SAMFilteredReader function. After backtracing the core file I got the following messages:
(gdb) bt
#0 BCFFilteredReader::parse_genotypes (this=this@entry=0x7ffebc17fd70, hdr=hdr@entry=0x248ab00, v=v@entry=0xdb6ef80) at bcf_filtered_reader.cpp:237
#1 0x0000000000425b98 in BCFFilteredReader::passed_vfilter (this=this@entry=0x7ffebc17fd70, hdr=0x248ab00, hdr@entry=0x0, v=0xdb6ef80, v@entry=0x0)
at bcf_filtered_reader.cpp:549
#2 0x00000000004270cc in BCFFilteredReader::read (this=this@entry=0x7ffebc17fd70) at bcf_filtered_reader.cpp:753
#3 0x0000000000407d2d in main (argc=<optimized out>, argv=<optimized out>) at cmd_cram_demuxlet.cpp:210
(gdb) list +
232 for(int32_t j=0; j < 2; ++j) {
233 tmp_gt = gts[sm_icols[i]*2+j];
234 if ( ( j < ploidies[i] ) && ( bcf_gt_allele(tmp_gt) >= 0 ) ) {
235 notice("%d %d %x %x", i, j, tmp_gt, bcf_gt_allele(tmp_gt));
236 ++an;
237 ++acs[bcf_gt_allele(tmp_gt)];
238 }
239 }
240 }
241 return true;
I have tried increasing the memory up to 400gb, but no luck after this. Any input on this would be greatly appreciated.
Dear Developers,
Thank you for your software, it has been very helpful.
I've been having an issue related to a core dumped while using the
SAMFilteredReaderfunction. After backtracing the core file I got the following messages:I have tried increasing the memory up to 400gb, but no luck after this. Any input on this would be greatly appreciated.
Thank you, Ciro