I am looking for a way to specify the ploidy of the samples, in particular, for sex chromosomes. I see sexMap in bcf_filtered_reader.cpp is a file that can specify sex, but isn't exposed on the command line. How do we specify the sex for the input samples in the input VCF?
I am looking for a way to specify the ploidy of the samples, in particular, for sex chromosomes. I see
sexMapinbcf_filtered_reader.cppis a file that can specify sex, but isn't exposed on the command line. How do we specify the sex for the input samples in the input VCF?