statgen / demuxlet

Genetic multiplexing of barcoded single cell RNA-seq
Apache License 2.0
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Consider cleaning up the history of this repository #9

Closed Shians closed 6 years ago

Shians commented 6 years ago

This repository is over 600MB in size when it should be significantly smaller.

du -ha | sort -h

reveals a very large .git folder. Using code from here I see there used to be a large supplementary.material folder which no longer exists. I'd suggest you either republish this repository and discard the history or maybe do something with Github's instructions for removing files and bfg to prune away these old files weighing the repository down.

yimmieg commented 6 years ago

Hi Shian,

Thank you so much for that suggestion. We have removed the supplementary.material folder from the repo history and created a separate repo for that in case anyone wants to reproduce the figures from our paper.

Best,

~Jimmie

On Wed, Jan 03, 2018 at 3:13 AM Shian Su < Shian Su ( Shian Su notifications@github.com ) > wrote:

This repository is over 600MB in size when it should be significantly smaller.

du -ha | sort -h

reveals a very large.git folder. Using code from here ( https://stackoverflow.com/questions/10622179/how-to-find-identify-large-files-commits-in-git-history ) I see there used to be a large supplementary.material folder which no longer exists. I'd suggest you either republish this repository and discard the history or maybe do something with Github's instructions for removing files ( https://help.github.com/articles/removing-sensitive-data-from-a-repository/ ) and bfg ( https://rtyley.github.io/bfg-repo-cleaner/ ) to prune away these old files weighing the repository down.

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