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statgen / demuxlet

Genetic multiplexing of barcoded single cell RNA-seq
Apache License 2.0
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Getting number of SNPs and SNP IDs used to assign each cell #95

Open erosix opened 2 years ago

erosix commented 2 years ago

Does demuxlet output the number of SNPs used to assign each cell to a donor? Is this the N.SNP column in the .best output file? Because often this number is just 1, does this mean that the donor-annotation is just based on 1 SNP?

Also, is it shown somewhere in the output which SNPs are used for each cell?

josemovi commented 1 year ago

Could you please follow up with this question? Thank you!