When duplicate variants are encountered in the merging step, the duplicate variants are ignored. Previously, this was not handled appropriately and when more than the expected number of variant records are encountered, merge computes a wrong number of ploidy leading to errors in the compute_features stage.
When duplicate variants are encountered in the merging step, the duplicate variants are ignored. Previously, this was not handled appropriately and when more than the expected number of variant records are encountered, merge computes a wrong number of ploidy leading to errors in the compute_features stage.