Hello, I was trying to plot a quick locuszoom plot using some GWAS data and user-provided LD data (formatted per instructions) and when I run the command:
../locuszoom/bin/locuszoom --metal metal_file.txt --refgene GBA --ld my_ld.txt
I get the following errors:
Traceback (most recent call last):
File "../LocusZoom/locuszoom/bin/locuszoom", line 28, in
main();
File "/data/amccall2/work/NBB/LocusZoom/locuszoom/bin/../src/m2zfast.py", line 2102, in main
conf = getConf()
File "/data/amccall2/work/NBB/LocusZoom/locuszoom/bin/../src/m2zfast.py", line 130, in getConf
conf = Conf(conf_file)
File "/data/amccall2/work/NBB/LocusZoom/locuszoom/bin/../src/m2zfast.py", line 119, in init
self._load(conf_file)
File "/data/amccall2/work/NBB/LocusZoom/locuszoom/bin/../src/m2zfast.py", line 123, in _load
execfile(file,conf_dict)
TypeError: execfile() argument 1 must be string, not None
Hello, I was trying to plot a quick locuszoom plot using some GWAS data and user-provided LD data (formatted per instructions) and when I run the command:
../locuszoom/bin/locuszoom --metal metal_file.txt --refgene GBA --ld my_ld.txt
I get the following errors:
Traceback (most recent call last): File "../LocusZoom/locuszoom/bin/locuszoom", line 28, in
main();
File "/data/amccall2/work/NBB/LocusZoom/locuszoom/bin/../src/m2zfast.py", line 2102, in main
conf = getConf()
File "/data/amccall2/work/NBB/LocusZoom/locuszoom/bin/../src/m2zfast.py", line 130, in getConf
conf = Conf(conf_file)
File "/data/amccall2/work/NBB/LocusZoom/locuszoom/bin/../src/m2zfast.py", line 119, in init
self._load(conf_file)
File "/data/amccall2/work/NBB/LocusZoom/locuszoom/bin/../src/m2zfast.py", line 123, in _load
execfile(file,conf_dict)
TypeError: execfile() argument 1 must be string, not None