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statgen / locuszoom-standalone

Create regional association plots from GWAS or meta-analysis
http://locuszoom.org/
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TypeError: execfile() argument 1 must be string, not None #18

Open nbbarrientos opened 10 months ago

nbbarrientos commented 10 months ago

Hello, I was trying to plot a quick locuszoom plot using some GWAS data and user-provided LD data (formatted per instructions) and when I run the command:

../locuszoom/bin/locuszoom --metal metal_file.txt --refgene GBA --ld my_ld.txt

I get the following errors:

Traceback (most recent call last): File "../LocusZoom/locuszoom/bin/locuszoom", line 28, in main(); File "/data/amccall2/work/NBB/LocusZoom/locuszoom/bin/../src/m2zfast.py", line 2102, in main conf = getConf() File "/data/amccall2/work/NBB/LocusZoom/locuszoom/bin/../src/m2zfast.py", line 130, in getConf conf = Conf(conf_file) File "/data/amccall2/work/NBB/LocusZoom/locuszoom/bin/../src/m2zfast.py", line 119, in init self._load(conf_file) File "/data/amccall2/work/NBB/LocusZoom/locuszoom/bin/../src/m2zfast.py", line 123, in _load execfile(file,conf_dict) TypeError: execfile() argument 1 must be string, not None

dralhindi commented 9 months ago

I keep getting this error too. Did you find a solution elsewhere?