Closed abought closed 6 years ago
abought
commented
6 years ago Merging this iteration into the develop branch so we can start using with PheWeb, but I'm very open to further improvements on request. My current hope would be a LZ 0.9.0 release ~next Wednesday (9/26).
abecasis
commented
6 years ago You are too fast.
I mean the following (as an example):
Go to https://abought.github.io/locuszoom/examples/gwas_catalog.html?chrom=10&start=114458349&end=115058349 (the TCF7L2 region in your examples).
There is an association to Glycated Hemoglobin Levels.
The association is sourced from a paper titled "Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis."
Can we link there? The link would be:
https://www.ncbi.nlm.nih.gov/pubmed/28898252
I think the GWAS catalog entries include the PMID (28898252 in this case).
G
On Fri, Sep 21, 2018 at 5:02 PM, Andy Boughton notifications@github.com wrote:
Merged #143 https://github.com/statgen/locuszoom/pull/143 into develop.
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Purpose
Per #124 , we would like to display GWAS catalog SNPs in a LocusZoom plot. This has utility beyond pheweb.
This PR adds a datasource that exposes the Portaldev api endpoint. See companion ticket for feature discussion. The UI side will be defined once we decide what filters and fields to apply.