Closed abought closed 4 years ago
Some gene symbol names, such as RF00008 / U1, can appear more than once in a single region.
When this happens, the gnomAD constraint source breaks because it uses symbols as the query key name. Using the same key twice is invalid graphQL.
The constraint source should deduplicate the list of gene names to handle this edge case, before sending the query on to gnomAD.
Reported via eqtl browser test case internally. See the specified gene name (near rs7212) at largest distance.
Fixed in 0.10.2.
abought
commented
4 years ago abought
commented
4 years ago
Description
Some gene symbol names, such as RF00008 / U1, can appear more than once in a single region.
When this happens, the gnomAD constraint source breaks because it uses symbols as the query key name. Using the same key twice is invalid graphQL.
The constraint source should deduplicate the list of gene names to handle this edge case, before sending the query on to gnomAD.
Steps to reproduce
Reported via eqtl browser test case internally. See the specified gene name (near rs7212) at largest distance.