statgen / pheweb

A tool to build a website to browse hundreds or thousands of GWAS.
MIT License
154 stars 65 forks source link

rsid change or missing #133

Closed stat-yyang closed 4 years ago

stat-yyang commented 4 years ago

Hi Peter,

we found some interesting things about SNP data in the final displayed results. Many of the SNP data are missing in the generated files. Do you know why this happens?

Thanks a lot!

pjvandehaar commented 4 years ago

Nice work getting your site up and running– it looks great and runs fast.

If this is still an issue, could you explain more about it? Which files are missing variants, and where had you seen those variants that made you expect them? Do you mean that the variants were in your input files but aren't in generated-by-pheweb/parsed/*.tsv? Could you copy-paste or screenshot the lines (and headers and a couple lines before/after) for one example of a missing variant?