`marisa-trie` causes a segfault in `pheweb make-tries`

statgen / pheweb

A tool to build a website to browse hundreds or thousands of GWAS.

MIT License

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`marisa-trie` causes a segfault in `pheweb make-tries` #141

Closed pjvandehaar closed 3 years ago

pjvandehaar commented 3 years ago

I use tries for the search autocomplete to:

map gene name/alias prefix to a list of genes
map rsid prefix to a list of variants
map chr-pos-ref-alt prefix to a list of variants

I'm already bothered that marisa-trie's BytesTrie().iteritems(prefix) returns ${prefix}11 before ${prefix}1. Hopefully sqlite3 works better for all these prefix searches and I can remove a C++ dependency.

pjvandehaar commented 3 years ago

marisa-trie is replaced with sqlite3.