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statgen / pheweb

A tool to build a website to browse hundreds or thousands of GWAS.
MIT License
154 stars 65 forks source link

Genetic correlations are not shown #194

Closed 11Dmitriy11 closed 2 years ago

11Dmitriy11 commented 2 years ago

Hello! I am using PheWeb 1.3.16 I genedarted pheno-correlations.txt and put it in the same folder as pheno-list.json. I put show_correlations = True in config.py, however the table on the site is empty. Also I tried to delete all NAs but I doesn't help. Is there anything else I have to do? Screenshot_69

Best, Dmitrii

pjvandehaar commented 2 years ago

Maybe run pheweb pheno-correlation?

On Sat, Mar 26, 2022 at 10:36 AM 11Dmitriy11 @.***> wrote:

Hello! I am using PheWeb 1.3.16 I genedarted pheno-correlations.txt and put it in the same folder as pheno-list.json. I put show_correlations = True in config.py, however the table on the site is empty. Also I tried to delete all NAs but I doesn't help. Is there anything else I have to do? [image: Screenshot_69] https://user-images.githubusercontent.com/51783229/160246429-929fbfd7-2636-45ab-9172-174878b67327.png

Best, Dmitrii

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11Dmitriy11 commented 2 years ago

Thank you! The file pheno-correlations.txt should contain only this columns: 'Trait1','Trait2','rg','SE','Z','P-value','Method' otherwise there will be an error