ModuleNotFoundError: No module named 'pheweb.command_line'

[sylee20]

I first tried to install with 'pip3 install pheweb' but got 'permission denied' error.

So I installed with the code suggested in 'detailed install instructions'.

sudo apt-get update
sudo apt-get install python3-pip python3-dev libz-dev libffi-dev
sudo python3 -m pip install wheel cython
sudo python3 -m pip install pheweb

Then I wanted to check if it's properly installed by typing 'pheweb --help' but I got this error:

Traceback (most recent call last):
  File "/usr/local/bin/pheweb", line 5, in <module>
    from pheweb.command_line import main
ModuleNotFoundError: No module named 'pheweb.command_line'

This is what else I've tried:

1. I ran this code:

   echo 'PATH="$HOME/.local/bin:$PATH"' >> ~/.bashrc

   Then closed the session and opened a new one but got the same error

2. When I run this code:

   sudo python3 -m pip show pheweb

   I get this result:

   Name: PheWeb
   Version: 1.3.16
   Summary: A tool for building PheWAS websites from association files
   Home-page: <https://github.com/statgen/pheweb>
   Author: Peter VandeHaar
   Author-email: pjvh@umich.edu
   License: UNKNOWN
   Location: /usr/local/lib/python3.6/dist-packages
   Requires: boltons, cffi, Flask, Flask-Compress, Flask-Login, gevent, gunicorn, intervaltree, numpy, psutil, pysam, rauth, requests, scipy, tqdm, wget

I tried adding this to /.bashrc file but it didn't workout:

PATH="/usr/local/lib/python3.6/dist-packages:$PATH"

3. I uninstalled and re-installed pheweb but still got the same error.

Can you please help me address this issue?

Thank you.

[pjvandehaar]

What if you run “sudo pheweb”?

If that doesn’t work, I recommend installing miniconda3 and using that to install pheweb.

On Mon, Aug 21, 2023 at 2:05 AM sylee20 @.***> wrote:

I first tried to install with 'pip3 install pheweb' but got 'permission denied' error.

So I installed with the code suggested in 'detailed install instructions'.

sudo apt-get update sudo apt-get install python3-pip python3-dev libz-dev libffi-dev sudo python3 -m pip install wheel cython sudo python3 -m pip install pheweb

Then I wanted to check if it's properly installed by typing 'pheweb --help' but I got this error:

Traceback (most recent call last): File "/usr/local/bin/pheweb", line 5, in from pheweb.command_line import main ModuleNotFoundError: No module named 'pheweb.command_line'

This is what else I've tried:

1. I ran this code:

echo 'PATH="$HOME/.local/bin:$PATH"' >> ~/.bashrc

Then closed the session and opened a new one but got the same error

1. When I run this code:

sudo python3 -m pip show pheweb

I get this result:

Name: PheWeb Version: 1.3.16 Summary: A tool for building PheWAS websites from association files Home-page: https://github.com/statgen/pheweb Author: Peter VandeHaar Author-email: @.*** License: UNKNOWN Location: /usr/local/lib/python3.6/dist-packages Requires: boltons, cffi, Flask, Flask-Compress, Flask-Login, gevent, gunicorn, intervaltree, numpy, psutil, pysam, rauth, requests, scipy, tqdm, wget

I tried adding this to /.bashrc file but it didn't workout:

PATH="/usr/local/lib/python3.6/dist-packages:$PATH"

1. I uninstalled and re-installed pheweb but still got the same error.

Can you please help me address this issue?

Thank you.

— Reply to this email directly, view it on GitHub https://github.com/statgen/pheweb/issues/211, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAGSPCNGCKSEPFGFIQ7BL2TXWMJEFANCNFSM6AAAAAA3X7PZWU . You are receiving this because you are subscribed to this thread.Message ID: @.***>

[sylee20]

Running "sudo pheweb" solved the problem. Thank you so much for your help!

[pjvandehaar]

Thanks for letting me know that it worked. I updated the instructions.

On Mon, Aug 21, 2023 at 10:49 PM sylee20 @.***> wrote:

Running "sudo pheweb" solved the problem. Thank you so much for your help!

— Reply to this email directly, view it on GitHub https://github.com/statgen/pheweb/issues/211#issuecomment-1687413877, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAGSPCMTQLCUH6TEQSUQUGTXWQ24RANCNFSM6AAAAAA3X7PZWU . You are receiving this because you commented.Message ID: @.***>