`pheweb augment-phenos` takes hours for just one single new GWAS

statgen / pheweb

A tool to build a website to browse hundreds or thousands of GWAS.

MIT License

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`pheweb augment-phenos` takes hours for just one single new GWAS #232

Open jielab opened 3 months ago

jielab commented 3 months ago

Hi, there:

please see the screenshot below. I previously processed 124 GWAS. Now just added 1 new GWAS. But pheweb augment-phenos takes hours, Completed 31 tasks in 95 minutes.

Why pheweb needs to re-process all 125 GWAS for this step, even though just 1 GWA is new? Is there a way to bypass this step?

Thank you very much! JH

pjvandehaar commented 3 months ago

Hi Jie.

I built PheWeb at my previous job. I left there 2.5 years ago. I've answered a lot of questions about it. I've lost interest in answering questions about it.

I will now answer one question per person per year.

jielab commented 3 months ago

Surely understood. Thanks for providing the audience a great software. If there is a way to help develop this software, I would love to contribute some funding from my research budget.

Best regards, Jie