issues
search
statgen
/
pheweb
A tool to build a website to browse hundreds or thousands of GWAS.
MIT License
158
stars
65
forks
source link
auto-detect reference genome
#87
Open
pjvandehaar
opened
7 years ago
pjvandehaar
commented
7 years ago
[x] Make
detect-ref
(host on pypi) which detects the compatible reference genomes for a set of variants.
http://hgdownload.cse.ucsc.edu/goldenPath/hg19/chromosomes/
provides per-chromosome per-build
.fa.gz
s, about ~50MB each. (Cache after downloading.)
it'd be easy enough to support vcfs, if that'd be useful.
[ ] use it in pheweb's parser. then what? automatically liftover to GRCh38?
detect-ref(host on pypi) which detects the compatible reference genomes for a set of variants..fa.gzs, about ~50MB each. (Cache after downloading.)