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statgen / pheweb

A tool to build a website to browse hundreds or thousands of GWAS.
MIT License
158 stars 65 forks source link

Show a table of phenotypes #95

Closed pjvandehaar closed 3 years ago

pjvandehaar commented 7 years ago

Where?

Should it show the best association (pval &c) for each phenotype?

abecasis commented 7 years ago

Maybe in the about page. It could include some summaries (# variants, # phenotypes, # queries, LD source, configurable options?) and also a list of phenotypes.

Gonçalo

Sent from my iPhone

On Jun 14, 2017, at 10:05 PM, Peter VandeHaar notifications@github.com wrote:

Where?

Should it show the best association (pval &c) for each phenotype?

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or mute the thread.

sgagliano commented 7 years ago

I agree that those summaries would be very helpful.

pjvandehaar commented 7 years ago

For each pheno,

also show a distribution of some of these?

abecasis commented 7 years ago

Genomic control also.

G

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On Jun 27, 2017, at 9:22 PM, Peter VandeHaar notifications@github.com wrote:

For each pheno,

id displayname description

cases/controls/samples

category? top variant's chr-pos-ref-alt&rsid top variant's p-value — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or mute the thread.

pjvandehaar commented 3 years ago

Added.