statgen pheweb issues - Githubissues

statgen / pheweb

A tool to build a website to browse hundreds or thousands of GWAS.

MIT License

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issues

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Improve DOM interaction

#84 pjvandehaar closed 6 years ago
0
Manhattan binning breaks down in snowstorms

#83 pjvandehaar closed 3 years ago
0
Make a pheweb where people can upload GWAS

#82 pjvandehaar closed 3 years ago
0
Title on Manhattan page different from title on LZ page

#81 sgagliano closed 7 years ago
1
Make RowFile{Reader,Writer} and use it for phenos <-> phenos.csv

#80 pjvandehaar closed 3 years ago
0
Improve multiprocessing code and progress display

#79 pjvandehaar closed 3 years ago
1
Add screenshots to README

#78 pjvandehaar closed 7 years ago
0
Improve the data-loading experience

#77 pjvandehaar closed 3 years ago
0
--simple-phenocode should start by removing common prefixes and suffixes

#76 pjvandehaar closed 7 years ago
0
Reduce LZ-region's padding between associations and genes

#75 pjvandehaar closed 7 years ago
0
Should we overshadow/replace the PheWAS scatterplot with a top-phenos table and LZ-region?

#74 pjvandehaar closed 3 years ago
1
tell people not to let miniconda symlink python->python3

#73 pjvandehaar closed 7 years ago
0
handle chr 23, 24, 25

#72 pjvandehaar closed 7 years ago
0
`pheweb parse` should automatically sort variants if they aren't sorted.

#71 pjvandehaar opened 7 years ago
0
use Sardinia-specific LD

#70 sgagliano closed 3 years ago
4
hide all [x]s in LZ tooltips

#69 pjvandehaar closed 7 years ago
0
On Manhattan, improve peak selection and keep 500 variants union 500 peaks unbinned.

#68 pjvandehaar closed 5 years ago
6
Idle in make-manhattan step

#67 phuwanat closed 3 years ago
12
Add a script to add chr-pos-ref-alt to input files with only rsid

#66 sgagliano opened 7 years ago
2
`pheweb check-requirements`

#65 pjvandehaar closed 7 years ago
0
Improve installation

#64 pjvandehaar closed 3 years ago
0
Show correlation between phenotypes in PheWAS plots

#63 pjvandehaar opened 7 years ago
3
Help with interpretation

#62 pjvandehaar opened 7 years ago
0
Remove vertical & horizontal lines from mouse on PheWAS

#61 pjvandehaar closed 7 years ago
0
Understand why a field|transform must be in .fields to work (even in phewas)

#60 pjvandehaar closed 7 years ago
2
Use Google OAuth and an email whitelist

#59 pjvandehaar closed 7 years ago
0
Add toolbar button "Choose LD reference"

#58 pjvandehaar closed 3 years ago
3
separate {required,optional} per-{pheno,assoc,variant} data, and allow adding more in `config.py`

#57 pjvandehaar closed 7 years ago
1
Use up/down triangles to show direction of effect in plots

#56 pjvandehaar closed 7 years ago
7
Make GA tracking code configurable!

#55 pjvandehaar closed 7 years ago
1
Replace phenocode/phenostring with displayname, id, slug

#54 pjvandehaar opened 7 years ago
0
Include pseudogenes&c in gene search

#53 pjvandehaar opened 7 years ago
0
The gene page doesn't say which chromosome we're on

#52 pjvandehaar closed 7 years ago
0
Handle genes that are longer than max-LZ-region

#51 pjvandehaar opened 7 years ago
0
Copy changes from Encore

#50 pjvandehaar opened 7 years ago
0
Make genome-wide significance thresholds configurable

#49 pjvandehaar closed 3 years ago
1
Use a headless browser for tests

#48 pjvandehaar opened 7 years ago
0
Update pheweb's version for each commit

#47 pjvandehaar closed 7 years ago
3
Do Top Hits disappear in pheno page?

#46 phuwanat closed 7 years ago
7
Allow conditioning on a variant

#45 pjvandehaar opened 7 years ago
4
Autocomplete should suggest shortest rather than longest

#44 pjvandehaar closed 3 years ago
3
Make Consortia-PheWeb

#43 pjvandehaar closed 7 years ago
4
Move more information on genes page into the table

#42 pjvandehaar opened 7 years ago
0
Get best-other-phenos for arbitrary regions, not just genes

#41 pjvandehaar closed 3 years ago
0
Highlight/label GWAS Catalog hits in LZ

#40 pjvandehaar closed 6 years ago
1
Make labels click/hoverable in LZ

#39 pjvandehaar closed 7 years ago
6
Make points clickable in LZ

#38 pjvandehaar closed 7 years ago
2
Add icd9 codes to PheWAS

#37 pjvandehaar opened 7 years ago
0
Apply correct styling to SVG exports

#36 pjvandehaar closed 3 years ago
0
Gene Search Table

#35 sgagliano closed 7 years ago
1

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