search

statgen / raremetal

A flexible tool for meta-analysis
7 stars 9 forks source link

Run single variant meta-analysis without aggregation tests #24

Open welchr opened 4 years ago

welchr commented 4 years ago

Single variant meta-analysis fails with an error unless a set test option is listed in the command, but runs fine as long as one set test flag is included. However, the command as a whole still errors out because it can’t run the set test without additional inputs. Seems there should be a way to run single variant meta-analysis without unused flags or getting command errors. This is especially a problem when running lots of jobs. They all return “error” codes in slurm, so it isn’t easy to differentiate which jobs actually worked and which ones actually failed.

alisonrocco commented 1 year ago

Is there any update on this issue? I've encountered the same problem:

FATAL ERROR - Covariance files are essential to do gene-level tests. Pleaes ues --covFiles your.list.of.cov.files option.

version is 4.15.1