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statgen / savvy

Interface to various variant calling formats.
Mozilla Public License 2.0
26 stars 5 forks source link

Cannot build savvy because sourceforge xz is down #22

Closed pettyalex closed 2 years ago

pettyalex commented 2 years ago

Hello,

I figured out why I can't build savvy locally: When I run cget build or cget install, it is trying to get xz, which is a dependency of shrinkwrap. Is there any way that xz could use the github mirror instead, so that at least savvy, shrinkwrap, xz, and other deps could all be coming from the same service with fewer points of failure?

When cget is trying to build XZ, it's getting back this and trying to build it as a package:

<noscript>
We're sorry -- the Sourceforge site is currently in Disaster Recovery mode.  Please check back later.
</noscript>
jonathonl commented 2 years ago

This tends to happen on occasion with sourceforge, but luckily xz is not required. Try running the following.

cget ignore xz
cget install -f requirements.txt
pettyalex commented 2 years ago

Thanks, this works. Good to know, this is the first application i've seen that uses cget.