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statgen / savvy

Interface to various variant calling formats.
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no warning if sample-ids-file is missing #5

Closed ilarsf closed 5 years ago

ilarsf commented 6 years ago

Hi, Jonathon,

sav export --sample-ids-file XXX will output the whole data if the --sample-ids-file is missing (I had a typo in the file name and no warning message showed up).

Thanks, Lars

jonathonl commented 6 years ago

So to clarify, you accidentally ran: 

sav export --sample-ids-file <input.sav>

but meant to run : 

sav export --sample-ids-file <ids.txt> <input.sav>

Am I understanding this correctly?

ilarsf commented 6 years ago

I ran sav export --sample-ids-file <ids.txt> <input.sav> but the <ids.txt> file was actually misspelled, i.e. missing.

jonathonl commented 6 years ago

I see. That will be an easy fix. Thanks for reporting.