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statgen / savvy

Interface to various variant calling formats.
Mozilla Public License 2.0
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SAIGE installs fail because statgen/savvy can't be accessed (Centos 6.x) #9

Open jbsysadmin opened 4 years ago

jbsysadmin commented 4 years ago

They fail the same way:

Downloading https://github.com/statgen/savvy/archive/.tar.gz "Download failed with error 400"

At the core, this command fails: cget install statgen/savvy@

Did you make some change which broke downstream installs using cget? Is there anything that you can publish that users should follow instead of that URL? You have some re-direct scheme in place. Is there another destination that people should use instead of the above? Also, how were users supposed to reach this through a proxy? No system config for proxy is honored during these attempts.

Thanks for any leads.

jonathonl commented 3 years ago

Hey, sorry it took so long to respond.

Any proxy issues you are experiencing should be directed to the cget maintainer (https://github.com/pfultz2/cget).

Manual Dependency Installation SAV v1.x depends on shrinkwrap, zlib, zstd, and htslib. SAV v2.x depends on shrinkwrap, zlib, and zstd.

If you do not install dependencies into default system locations, you can add -DCMAKE_PREFIX_PATH=</path/to/dep/install/prefix> to the CMake configure step.