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statgenlmu / coala

A Framework for Coalescent Simulation in R
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ms simulation failed #203

Open Thinking2018 opened 4 years ago

Thinking2018 commented 4 years ago

I use coala package to simulate coalescent data

with fixed number of markers

The code is as follows m = 100 locus.n = 500 model <- coal_model(m, 0) + locus_averaged(locus.n,10)+ feat_mutation(1,fixed_number = T) + sumstat_seg_sites()

sumstats <- simulate(model,seed = 124+i) sites <- sumstats$seg_sites X <- sapply(sites,as.matrix)

When I package the above code into a function use `parSapply' to simulate more data matrix X, it shows that error message

ms simulation failed

xuelingyi commented 3 years ago

I got a similar error. Perhaps you have solved it, but if not, adding the feature feat_pop_merge() may help.