Closed MatthewThe closed 7 years ago
Mgf files work but it seems Maracluster does not read the scan numbers, and instead outputs some index number. Below is an example mgf spectrum.
BEGIN IONS TITLE=File3233 Spectrum1 scans: 955 PEPMASS=419.31415 142643.59375 CHARGE=2+ RTINSECONDS=1519 SCANS=955 100.78580 389.208 121.02799 1375.67 141.32939 348.489 148.97514 371.168 149.02254 80548.1 167.03293 3469.45 209.89798 363.966 248.89998 505.242 305.88007 480.797 322.83035 1847.01 326.83221 422 378.72043 539.584 378.73157 472.819 379.72842 2027.64 396.68686 1624.04 396.85779 606.745 414.69812 3246.26 418.99304 1784.92 740.50848 427.397 END IONS
Proteowizard seems to store the SCANS field in a variable which only exists for mgf files. We could parse this variable before checking the id field (as this gets set to index=<index_number> by proteowizard upon reading the mgf file).
index=<index_number>
Mgf files work but it seems Maracluster does not read the scan numbers, and instead outputs some index number. Below is an example mgf spectrum.
Proteowizard seems to store the SCANS field in a variable which only exists for mgf files. We could parse this variable before checking the id field (as this gets set to
index=<index_number>by proteowizard upon reading the mgf file).