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statisticalbiotechnology / quandenser-pipeline

A nextflow/singularity pipeline for quandenser
Apache License 2.0
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Kernel issues with installer #36

Open b4yne opened 3 years ago

b4yne commented 3 years ago

When I try to install this on Ubuntu 20.04.2 LTS via VirtualBox, everything works until the Singularity container, when it starts throwing these errors repeatedly:

FATAL: container creation failed: mount /proc/self/fd/6->/usr/local/var/singularity/mnt/session/rootfs error: can't mount image /proc/self/fd/6: kernel reported a bad superblock for squashfs image partition, possible causes are that your kernel doesn't support the compression algorithm or the image is corrupted

When I search around it seems like these problems may be resolved in Singularity 3.5.2 and higher. Not sure if you can pinpoint the error, suggest anything for me, or if there are any plans to update the installer to newer versions of Singularity? Thanks!

MatthewThe commented 3 years ago

Sorry for the slow reply. We will try to update the image to a newer version of Singularity.