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statisticalbiotechnology / quandenser

QUANtification by Distillation for ENhanced Signals with Error Regulation
Apache License 2.0
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Indirect exception when setting maracluster pval threshold #15

Closed chrashwood closed 4 years ago

chrashwood commented 4 years ago

When trying to set the maracluster pvalue threshold, there is an exception for the -t option which was not specified in the run parameters. This appears to be specific for the maracluster pval threshold.

C:\Users\chras\mzML Files> quandenser -b "file_list.txt" --max-missing 3 --dinosaur-memory 16G --maracluster-pval-threshold -30.0
Exception caught: -t option requires a float between -1000 and 0

Trying to manually set -t to 0.2 does not fix this.

C:\Users\chras\mzML Files> quandenser -b "file_list.txt" --max-missing 3 --dinosaur-memory 16G --percolator-test-fdr 0.02 --maracluster-pval-threshold -30.0
Exception caught: -t option requires a float between -1000 and 0

Cheers, Chris

MatthewThe commented 4 years ago

Apparently, I made a dumb copy-paste error... I fixed it now. If you want, I could build a binary installer for you to test.

chrashwood commented 4 years ago

Yes please! Thank you.

MatthewThe commented 4 years ago

There you go (I assumed you were working on windows 64-bit): quandenser-v0-02-win64-msvc-x64.zip

chrashwood commented 4 years ago

Thanks. Good assumption.