statisticalbiotechnology / triqler

The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
Apache License 2.0
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Large scale optimizations #7

Closed MatthewThe closed 5 years ago

MatthewThe commented 5 years ago

This replaces some operations on python lists by their numpy equivalents to speed up calculation on larger datasets. Also, we skip the posterior calculation for proteins with identification PEP = 1.0, since they will never be differentially abundant anyway.