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statonlab / hardwoods_site

Hardwoods Genomics bugs, data loading, and general issues
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Green Ash P-value loading #543

Open mestato opened 4 years ago

mestato commented 4 years ago

Goal: to load p-values for EAB, drought, cold, heat, ozone and mechanical wounding. (Ignore pre-feeding and post-feeding EAB sheets).

Paper: https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-016-3052-0

P-value file: https://static-content.springer.com/esm/art%3A10.1186%2Fs12864-016-3052-0/MediaObjects/12864_2016_3052_MOESM4_ESM.xlsx

Documentation: https://github.com/tripal/tripal_analysis_expression

CaseyRichards92 commented 4 years ago

Response to wounding is available but mechanical wounding is not.

https://www.ebi.ac.uk/ols/ontologies/go/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FGO_0009611

mestato commented 4 years ago

Response to wounding works for me

CaseyRichards92 commented 4 years ago

How will tripal know the difference between MW 5HR and MW 24HR? Inputs are the same for loading

mestato commented 4 years ago

Oh, this would be a good thing to add as a comment. I wonder if @jwest60 could add that. But in general, those will just be the same