Acer yangbiense genome - Githubissues

statonlab / hardwoods_site

Hardwoods Genomics bugs, data loading, and general issues

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Acer yangbiense genome #547

Open mestato opened 4 years ago

mestato commented 4 years ago

Publication and Data Information

https://academic.oup.com/gigascience/article/8/7/giz085/5532406

Additional Information

Checklist

See New Genome Documentation for detailed instructions.

[x] Create Organism
[x] Create Publication
[x] Create Reference Genome
[x] Create InterProScan Annotation
[x] Create BLAST Annotation
[x] Run Chado FASTA Loader for CDS
[x] Run Chado FASTA Loader for Polypeptides
[x] Publish Tripal content
[x] Create KEGG Annotation
[x] Run Chado KEGG Loader
[x] Run Chado BLAST XML results loader
[x] Run Chado InterProScan XML results loader
[x] Create Blast Database

patricksis commented 4 years ago

File location: http://gigadb.org/dataset/100610

patricksis commented 4 years ago

Organism: https://www.hardwoodgenomics.org/organism/Acer%20/yangbiense Publication: https://www.hardwoodgenomics.org/Publication/3930254 Reference Genome: https://www.hardwoodgenomics.org/Genome-assembly/3930255 Swissprot annotation: https://www.hardwoodgenomics.org/BLAST-annotation/3930256 tremble annotation: https://www.hardwoodgenomics.org/BLAST-annotation/3930257 IPS annotation: https://www.hardwoodgenomics.org/InterProScan-annotation/3930258 fasta loader cds: https://www.hardwoodgenomics.org/admin/tripal/tripal_jobs/view/847310 fasta loader pep: https://www.hardwoodgenomics.org/admin/tripal/tripal_jobs/view/847311 Published tripal content: https://www.hardwoodgenomics.org/admin/tripal/tripal_jobs/view/847481 KEGG annotation: https://www.hardwoodgenomics.org/KEGGresults/3958580 kEGG loader: https://www.hardwoodgenomics.org/admin/tripal/tripal_jobs trembl loader: https://www.hardwoodgenomics.org/admin/tripal/tripal_jobs/view/861985 swissprot loader: https://www.hardwoodgenomics.org/admin/tripal/tripal_jobs/view/861990 ips loader: https://www.hardwoodgenomics.org/admin/tripal/tripal_jobs/view/861994

patricksis commented 4 years ago

bdb: transcripts: https://www.hardwoodgenomics.org/content/acer-yangbiense-transcripts scaffolds: https://www.hardwoodgenomics.org/content/acer-yangbiense-scaffolds peptides: https://www.hardwoodgenomics.org/content/acer-yangbiense-peptides