statonlab / hardwoods_site

Hardwoods Genomics bugs, data loading, and general issues

GNU General Public License v3.0

2 stars 1 forks source link

Querus rubra Ozone Stress p-values #574

Open MattHuff opened 4 years ago

MattHuff commented 4 years ago

Publication

https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-020-6549-5

p-values

Found in Table S2

These need to be loaded onto the website for Quercus rubra.

CaseyRichards92 commented 4 years ago

Starting on up-regulated

CaseyRichards92 commented 4 years ago

@almasaeed2010 @MattHuff Experimental factor for "ozone" needs to be added to p-value loader.

@MattHuff Which Q.robur analysis should we associate with these p-values? The transcriptome assembly? or should I create an analysis associated to the paper.

almasaeed2010 commented 4 years ago

@cricha59 try using response to ozone as the experimental factor

CaseyRichards92 commented 4 years ago

@almasaeed2010 That worked

MattHuff commented 4 years ago

@cricha59 I would make this a separate analysis.

CaseyRichards92 commented 4 years ago

P-value job https://hardwoodgenomics.org/admin/tripal/tripal_jobs/view/874031

CaseyRichards92 commented 4 years ago

P-value response to ozone page https://hardwoodgenomics.org/tripal_analysis_expression/pvalue/cvterm/66047/19

CaseyRichards92 commented 4 years ago

Publication created https://hardwoodgenomics.org/Publication/3958746?tripal_pane=group_summary_tripalpane