search

statonlab / hardwoods_site

Hardwoods Genomics bugs, data loading, and general issues
GNU General Public License v3.0
2 stars 1 forks source link

Malus domestica Reference Genome #590

Open patricksis opened 4 years ago

patricksis commented 4 years ago

Publication and Data Information

https://phytozome.jgi.doe.gov/pz/portal.html#!info?alias=Org_Mdomestica

Additional Information

Checklist

See New Genome Documentation for detailed instructions.

patricksis commented 4 years ago

Organism: https://hardwoodgenomics.org/organism/Malus/domestica?tripal_pane=group_summary_tripalpane Publication: https://hardwoodgenomics.org/Publication/4073221 Reference Genome: https://hardwoodgenomics.org/Genome-assembly/4073223? IPS annotation: https://hardwoodgenomics.org/InterProScan-annotation/4073224 Swissprot annotation: https://hardwoodgenomics.org/BLAST-annotation/4073225 Trembl annotation: https://hardwoodgenomics.org/BLAST-annotation/4073226 CDS loader: https://hardwoodgenomics.org/admin/tripal/tripal_jobs/view/882290 Polypeptide loader: https://hardwoodgenomics.org/admin/tripal/tripal_jobs/view/882294 Published tripal content: https://hardwoodgenomics.org/admin/tripal/tripal_jobs/view/882523 Trembl xml loader: https://hardwoodgenomics.org/admin/tripal/tripal_jobs/view/887708 Swissprot xml loader: https://hardwoodgenomics.org/admin/tripal/tripal_jobs/view/887715 IPS xml loader: https://hardwoodgenomics.org/admin/tripal/tripal_jobs/view/887738 KEGG annotation: https://hardwoodgenomics.org/KEGGresults/4148737 KEGG loader: https://hardwoodgenomics.org/admin/tripal/tripal_jobs/view/888355

patricksis commented 4 years ago

transcripts bdb: https://hardwoodgenomics.org/content/malus-domestica-transcripts peptides bdb: https://hardwoodgenomics.org/content/malus-domestica-peptides scaffolds bdb: https://hardwoodgenomics.org/content/malus-domestica-scaffolds

patricksis commented 4 years ago

Jbrowse: https://hardwoodgenomics.org/admin/tripal/extension/tripal_jbrowse/management/instances/34